Protein Info for PS417_00640 in Pseudomonas simiae WCS417

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details amino acids 83 to 108 (26 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 248 to 267 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 92 to 275 (184 residues), 53.4 bits, see alignment E=1.4e-18

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 99% identity to pfs:PFLU0126)

Predicted SEED Role

"Taurine transport system permease protein TauC" in subsystem Taurine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UAY8 at UniProt or InterPro

Protein Sequence (282 amino acids)

>PS417_00640 ABC transporter permease (Pseudomonas simiae WCS417)
MRQEYEITLEPLISVPVERELPLRQRLWQQGWLRKGLILVVLAILWEVVARYQNNDLLLP
SFLQTFHALYDGLLSGELLSKVSISLVVLIKGYLIGIVLAFALTTLAVSTQLGRDLLSTL
TSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYSGFLGVSETLRMAGRN
YGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGWYIFQNR
NELYTDKVFAGLAVVILIGLLVENLVFDTFERLTVKRWGMQR