Protein Info for GFF1261 in Methylophilus sp. DMC18
Annotation: 2-oxoglutarate carboxylase small subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 57% identical to 2OCS_HYDTT: 2-oxoglutarate carboxylase small subunit (cfiB) from Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
KEGG orthology group: None (inferred from 88% identity to meh:M301_1331)MetaCyc: 55% identical to pyruvate carboxylase subunit A (Methanothermobacter thermautotrophicus Delta H)
Pyruvate carboxylase. [EC: 6.4.1.1]
Predicted SEED Role
"Pyruvate carboxylase subunit A (EC 6.4.1.1)" (EC 6.4.1.1)
MetaCyc Pathways
- gluconeogenesis III (8/12 steps found)
- gluconeogenesis II (Methanobacterium thermoautotrophicum) (12/18 steps found)
- reductive TCA cycle I (6/11 steps found)
- incomplete reductive TCA cycle (3/7 steps found)
- (S)-lactate fermentation to propanoate, acetate and hydrogen (3/13 steps found)
- Methanobacterium thermoautotrophicum biosynthetic metabolism (21/56 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 6.4.1.1
Use Curated BLAST to search for 6.4.1.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (472 amino acids)
>GFF1261 2-oxoglutarate carboxylase small subunit (Methylophilus sp. DMC18) VFKKILVANRGEIAVRIVRACSEMGIKSVAIYSDADRHALHVKKADEAYNIGSDPVAGYL NAHNIVNIAVAAGCDALHPGYGFLSENPELAEVCERRGIKFIGPDADVIRQMGDKIQARN AMINAGIPCVPGSEGNLESVEAAVTLANKIGYPVMLKATNGGGGRGIRRCDSEKELLSNY DRVISEASKAFGKPEVFLEKCVVHPRHIEVQVLADSHGNVIHLFERDCSIQRRNQKLIEI APSPQLTQAQREYIGGLGVKAAKAVGYENAGTVEFLLDSDNNFYFMEMNTRLQVEHTVTE TITGVDIVQQQIRVAAGLPLQYKQSEIAFRGFAMEYRINAEDPKKDFLPSFGKITRYYAP GGPGVRMDAAIYSGYVIPPYYDSMCAKLTVWALDWESVIERGRRALNDMIVYGVKTTIPY YQQIMQHPDFRAADFNTSFVEQHPELTEYDVGLPKELMAAAIAAAIAAHEGI