Protein Info for GFF1259 in Sphingobium sp. HT1-2

Annotation: EXOPOLYSACCHARIDE PRODUCTION PROTEIN EXOQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 transmembrane" amino acids 31 to 53 (23 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 223 to 239 (17 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 366 to 387 (22 residues), see Phobius details amino acids 396 to 412 (17 residues), see Phobius details amino acids 424 to 441 (18 residues), see Phobius details PF04932: Wzy_C" amino acids 228 to 374 (147 residues), 75.2 bits, see alignment E=2.4e-25

Best Hits

KEGG orthology group: None (inferred from 76% identity to sjp:SJA_C1-19250)

Predicted SEED Role

"EXOPOLYSACCHARIDE PRODUCTION PROTEIN EXOQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>GFF1259 EXOPOLYSACCHARIDE PRODUCTION PROTEIN EXOQ (Sphingobium sp. HT1-2)
MASTPWHRDIPAPVLTRPGVAAIKKTESARLILVAQIFYFTFLMLVFIGQQPFASRTQDE
LVAMAQENNGSDLFKQALFIGFAMLLTGVQLIRRYPPRYRFTLWPLAIMLAWFFITCSWG
VDPFVSFKRAMQQLIVIYITFSALSLIGPERLLQALRYALILSLIICWVSLPLTSAAVHP
PTESDKALIGAWRGFFFHKNIAGAVMALTFMVAANAWVDTKKWYYALFSVMAFVFVIGTK
SKTSLALSFAILGVCAVYRALSDSTQKRAVLLIMVALGMVGVLWLYVAFQPVVERIFADP
TSFTGRVSIWEVDLAYLKDHPFLGAGFGGFWQVGDRSPSLDYLNQAFQTLTAHSHNGYLE
ILVTTGPLGLIMLLLTFLALPAIWFLTGATPQNRPIMVPCFAIWVFVLYQNLLETSFFDK
DRQVWVIFLAAIAAAHATYKARPLPQWRRRFLARPEATHG