Protein Info for GFF1209 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 transmembrane" amino acids 159 to 179 (21 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 339 to 359 (21 residues), see Phobius details PF07696: 7TMR-DISMED2" amino acids 15 to 143 (129 residues), 85.7 bits, see alignment E=5.9e-28 PF07695: 7TMR-DISM_7TM" amino acids 158 to 359 (202 residues), 79 bits, see alignment E=9.6e-26 PF00512: HisKA" amino acids 427 to 493 (67 residues), 35.6 bits, see alignment E=1.6e-12 PF02518: HATPase_c" amino acids 537 to 644 (108 residues), 68.5 bits, see alignment E=1.3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (645 amino acids)

>GFF1209 hypothetical protein (Variovorax sp. SCN45)
MPLKLSPLAGVDSHGHLSVLRDPEGRLSADEAAADSAWKPLPGAVNAGYTSDILWLRLSV
QRPVDAPAQWLAQFSNALLDDVRLYRQDASGQWQLAMQSGEDMGRSNWPVDARNVQLPLT
LQSADPTPLLLRIRTRNAMSTTLGFATPEVYAGTARREYLFYGLGFGFGLMLIAFHSLFW
QMTRERVSAWYLLYVSNALLVEFLTAGLPQQLFDMPSRLSDAMASLTICAGLAIGIRFAV
MQLGADLRWPRFTGVVMHGVTLLCLVAAALVLGGHNGPAMLLIQPVAMLCILWLVGSALW
LLPRDEGQARAFLLIFGIYYAGVLASFVRNLGWLPANVWTNNATALGTLLHLLLMSMRLN
RRYDQLRREKEAAQERLVQVVGRHNDRLEEEVRTRTADLRGEIEQRQRLEADLRAALETE
RRAKQSQVDFVAMVSHEFRTPLAIINTTAQQIAKNLDAAREKTLARCLNLRAAAQRMTAL
VDEYLTADRMEAGQTPFQPRVCEREELMELFEDLAADWPDGRVVLQDHQLPRQLVCDPGL
LRVALRNLLANADRHTPADRAIALDVIPAEETGLRIRVSNPGDEIPPDEVSRLFEKYFRG
RKAAQSPGAGLGLYLVHQIAELHRGEARLESAGQDGQVRFSLALP