Protein Info for GFF1209 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Probable transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 transmembrane" amino acids 21 to 43 (23 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details PF06912: DUF1275" amino acids 21 to 232 (212 residues), 138 bits, see alignment E=1.7e-44

Best Hits

KEGG orthology group: None (inferred from 62% identity to bgf:BC1003_0973)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (246 amino acids)

>GFF1209 Probable transmembrane protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
VFPPIRGFTSLQRTPQTDLKLGSVLAFVAGAANAGGFLAVGRYTSHMTGIVSSVADHLVL
GELTLALAGLGSVLAFLLGAMTTAWLVNWGLRRELRSAYGLPLVLEAAALLVFGLFGAAI
GFMTPVFLPLTVVLLCFIMGLQNAVITKISRATIRTTHVTGLVTDLGIELGKLLYVNRQP
GAAPVRAHRGRLRVHSQLIACFFFGGLAGALGFKHLGFISTLPLALMLLLLVMRPALDDW
QRLRAA