Protein Info for GFF1201 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Outer membrane protein assembly factor YaeT precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF06977: SdiA-regulated" amino acids 30 to 276 (247 residues), 282 bits, see alignment E=3.6e-88 PF13449: Phytase-like" amino acids 52 to 168 (117 residues), 28.1 bits, see alignment E=1.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to stm:PSLT010)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>GFF1201 Outer membrane protein assembly factor YaeT precursor (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MFRYLCNQKAALLTAILLMAAGVLTLCFPESWYPQETEWHLTAEKEITGIHGGLSGLTWN
PDSRTLFAVTDHPSSVVELDTEGNVLRVIPSDGDHDFEAIEYLGGNRYALSRERERTLTT
HCIDSSTTVLPPATYSLTLDVNRHSDNAGFEGLARGRGEHALMVAQEKKPLRLYVTDRSP
DALSVSDSLTHRASLPWFLKDISGLHYDRNNGLLYVLSHESAVVVVSGLDGGRKVMSLHR
GLCGLRSDIPQAEGITSDDRDTLWIVSEPNLFYRFTRTAAS