Protein Info for PS417_06090 in Pseudomonas simiae WCS417

Annotation: extensin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 224 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 88 to 109 (22 residues), see Phobius details PF06904: Extensin-like_C" amino acids 53 to 224 (172 residues), 209.3 bits, see alignment E=2.4e-66

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfs:PFLU1246)

Predicted SEED Role

"extensin-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UB94 at UniProt or InterPro

Protein Sequence (224 amino acids)

>PS417_06090 extensin (Pseudomonas simiae WCS417)
MLLILAGACAVGVWRGWVPLPADWNPWAPLDVRASPNLLTRYKLGRLQDDPALCDQVLVT
SGLRVSHQADTPADAACPLRNTLRVQGAAVGLSSSFLASCPLAVAFALFERHSLQPAAQA
VFGQAVTRVDHLGSFACRNMYNRAEGRLSQHASANALDIAGFRLADGRTVSVLRDWPGEG
EKARFLREVRDSACDDFNVVLSPDYNAAHRNHFHLDMGRWWVCR