Protein Info for GFF1185 in Pseudomonas sp. DMC3

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 210 to 225 (16 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details PF22588: dCache_1_like" amino acids 222 to 306 (85 residues), 61.8 bits, see alignment E=5.8e-21 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 365 to 531 (167 residues), 162.8 bits, see alignment E=3e-52 PF00990: GGDEF" amino acids 368 to 529 (162 residues), 155.7 bits, see alignment E=9.4e-50

Best Hits

KEGG orthology group: None (inferred from 73% identity to pba:PSEBR_a2692)

Predicted SEED Role

"PUTATIVE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>GFF1185 hypothetical protein (Pseudomonas sp. DMC3)
MVIFQEMRDDKHKDPQMLGRKMPKSRGHDAAETAPIKAASEIAAFRLTVIFMLTVILAFL
GVEGWRTWRDYHAAFSSARDSVTNLARATAQHAEDAIRQVDVLTAALGERVEGDGLQNID
VPRIHNLLVQQAKLMPQLHGLFIYGPDGKWIVTDKEMIPDPANNADRDYFQYHRANTDRN
VRIGDVVKSKSTDDLIIPISRRLNNPDGSFAGVLLGTIKVSYFVDYYGDFKIDDKGALVL
ALRNGTILVRRPFIASVIGQSLADSEVFKNYLPFSSQGIAEVRAVVDGTQRLYGYRALST
YPLVVETGLSRESIIAPWRWDLIKTGFVLMSVITAFTVFGLIVLRQLRQRMVMEKDLRRA
HQAMKDMALTDSLTGLANRRRLDTALIDEIRLARRQGSSISLIMIDVDHFKLYNDSYGHA
AGDDCLSAVGQAIAQAVKRPGDLAVRYGGEEFSVLLPNTDIRGAALVAQEILEAIRSLRM
EHKAHPLGHVTASAGIAVGKPAEQEVSPATLIESADKLLYAAKQKGRDRYCIGEEVLGA