Protein Info for GFF1179 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 190 to 209 (20 residues), see Phobius details amino acids 214 to 231 (18 residues), see Phobius details amino acids 243 to 267 (25 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 334 to 355 (22 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details PF02518: HATPase_c" amino acids 528 to 623 (96 residues), 30.6 bits, see alignment E=1.9e-11

Best Hits

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_2572)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (627 amino acids)

>GFF1179 no description (Variovorax sp. SCN45)
VIPGGVRRWLLAALWLPLLAAMALHAHASGAEVPETPGVLDVSSAEATLEPDGLPTQVRR
VPLPFRWDHEFPGLGGKASYRIELPASAVPANAPSALLMSGVGNQVAVSFNDALVASYGT
LGDPGYEASKGNHLVHVAAALHREGQPQVLVVRTTIQRQRGAGLASVQYGTEASLAPIYR
AQQNWRNTSAIVYAVSLLLMGGMAGGLWLRQRDALYGCFALAALSGVARNLDRVWPEVPV
PWPLWGAVVAVCYACHIGFIARFVLLVLERNPPWLVRSIYAALATTVMLACASFAFALPK
LWTSGLVILQVTSIVCLPYVVYGALVGRRRIAKVLMAAGSLAILAGAHDLLLVRMGLFGG
AEYTLTAHAMFIFVMILAGLVVERYSRTVADYRALNANLAARIDEREAQLRGAFDTMRQQ
QQEQAVLLERQRIMREIHDGVGSQLVGLLNVVTQPAPDRNVVEEHVKLALDEMRMAVDSL
QPTYDDLPTVLATLRYRLQPRLDAAGIELVWDVAVIPATAPFAAQAALQLQRILLEAFTN
VLKHASATRIVMHASWHGEETPPLVRIMLTDNGRGLPAAPDGSRPPGHGIANMRARAQSI
GAKLRIETADEHAGGTRVLMDWPCTLA