Protein Info for GFF1161 in Methylophilus sp. DMC18

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 130 PF04430: DUF498" amino acids 14 to 121 (108 residues), 100.1 bits, see alignment E=3.7e-33

Best Hits

KEGG orthology group: K09008, hypothetical protein (inferred from 49% identity to meh:M301_1097)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (130 amino acids)

>GFF1161 hypothetical protein (Methylophilus sp. DMC18)
MKLHLHTGEQQYQIHGVDSDAVTINQQRYPQPVIVSDQALRTDWFHGPWEKLDAQALSVI
LEFKPEVVLLGTGDKQRFIHPKHLQPFLSELIAVECMTTAAACRTFNILSAENRKVVAAL
LLEKHLSDAT