Protein Info for GFF1153 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 PF00126: HTH_1" amino acids 15 to 74 (60 residues), 57.6 bits, see alignment E=9.9e-20 PF03466: LysR_substrate" amino acids 99 to 313 (215 residues), 112.1 bits, see alignment E=2.5e-36

Best Hits

KEGG orthology group: None (inferred from 38% identity to axy:AXYL_04180)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>GFF1153 Transcriptional regulator, LysR family (Hydrogenophaga sp. GW460-11-11-14-LB1)
MTEPLSPSTFTGVRLSHLLLCRALVSTGTLHGAARLLHRTQPAVTKMLQELESSLGVRLF
ERGRMGTHPTASGRAFLHRAEVMLNEWGILRDELQAIEAGEAGLLRVGATPIMLLSLLPR
ALGRFLERRPGMLVRFREGSIHDLLIALDSGEVDCVVGRFSGELLDSEPRRTLRVERLYD
ETLAIVAGARHPLARRRRSVGWQELAQAQWVLPPPELVTRQLLNTEFIRGGVTPPKPLME
SASFTSSLALAHELVTLAMVPLDAARLAQRHGLVRVLRTPLSTFSAPISIVQRPSSLQGE
VYADFLASVRAAAAQVRA