Protein Info for PS417_05825 in Pseudomonas simiae WCS417

Annotation: cytochrome D ubiquinol oxidase subunit II

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 PF18306: LDcluster4" amino acids 85 to 198 (114 residues), 51.9 bits, see alignment E=6.9e-18 TIGR00730: TIGR00730 family protein" amino acids 86 to 264 (179 residues), 102.5 bits, see alignment E=1.1e-33 PF03641: Lysine_decarbox" amino acids 129 to 261 (133 residues), 97.8 bits, see alignment E=5.8e-32

Best Hits

KEGG orthology group: K06966, (no description) (inferred from 97% identity to pfs:PFLU1191)

Predicted SEED Role

"Decarboxylase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2V8 at UniProt or InterPro

Protein Sequence (370 amino acids)

>PS417_05825 cytochrome D ubiquinol oxidase subunit II (Pseudomonas simiae WCS417)
MPYEPNDRLLRHFEQHGTDLTQQVDAQLQLIAPNSPNIPLYRDMILTVLRMAQDDRNRWN
AKITLQAIRELDNAFRVLEQFKGRRKVTVFGSARTPVESPLYALAREVGAALARSDLMVI
TGGGGGIMAAAHEGAGLEHSLGFNITLPFEQHANPTIDGTENLLSFHFFFTRKLFFVKEA
DALVLCPGGFGTLDEALEVLTLIQTGKSPLVPVVLLDAPGGGFWQGALDFIRSQLEANRY
ILPTDLKLIRLVYSAEEAVDEINQFYANFHSTRWLKREFVVRMNHPLSERALAHLQSEFA
SLRLSGEFQQLAYTGEEHDEPRFSHLTRLVFNFNGRDQGRLRELVDYINLPENWAQAQGK
AQQRVAPEPA