Protein Info for PS417_05715 in Pseudomonas simiae WCS417

Annotation: baseplate assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 TIGR01644: phage baseplate assembly protein V" amino acids 35 to 200 (166 residues), 65.8 bits, see alignment E=2e-22 PF04717: Phage_base_V" amino acids 37 to 92 (56 residues), 25.1 bits, see alignment E=9.2e-10

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU1171)

Predicted SEED Role

"Baseplate assembly protein V"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2U1 at UniProt or InterPro

Protein Sequence (203 amino acids)

>PS417_05715 baseplate assembly protein (Pseudomonas simiae WCS417)
MFDALLRMQLGPIVERLAEMEAQLEDLYRRADSFCRIGVCQEVDAATNTCKVSHGDLLSP
AIQFFNPSAGAQTETRIPSVGEQCLLLNYGGGEGGAQSVALFGLNSSLFPPVSDVASLTR
RRHQDGTQSDYDDASHIFNWVNGPTTFSGSREQVDVKVGAASLTLNAQSITLQLGVTGVL
LDAAGVHLSGPVVDHQGRVISRA