Protein Info for GFF1126 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: putative (L31491) ORF2; putative [Plasmid pTOM9]

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 18 to 39 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 55% identity to dia:Dtpsy_1805)

Predicted SEED Role

"putative (L31491) ORF2; putative [Plasmid pTOM9]"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>GFF1126 putative (L31491) ORF2; putative [Plasmid pTOM9] (Hydrogenophaga sp. GW460-11-11-14-LB1)
MYNSETPLRAELPSSKQLLRSTVLAAVSAVVLLVAVVLPSEYGIDPTGVGRVLRLTEMGE
IKTQLAAEAAADTAAASGNSVVTSAQAQQPQPGARSAPTQAVTTDAKPAVQEAPWRDEMT
VTLTPGEGTEIKMRMSEGAKAEYTWVVQGGRVNFDTHGDGGGKNISYEKGRDVPADDGQL
VAAFTGNHGWYWRNRGKADVKLVLRTRGEYTDIKRAM