Protein Info for PS417_05705 in Pseudomonas simiae WCS417

Annotation: pyocin R2, holin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 46 to 68 (23 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details PF16085: Phage_holin_3_5" amino acids 1 to 110 (110 residues), 179.6 bits, see alignment E=9.3e-58

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU1169)

Predicted SEED Role

"Holin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5L1 at UniProt or InterPro

Protein Sequence (114 amino acids)

>PS417_05705 pyocin R2, holin (Pseudomonas simiae WCS417)
MTNEQQALAEMPIWLVIVLALIGGVSGEMWRADKEGARGWSLVRRLALRSGACMVCGVSA
LMLCYAAGMSIWTAGAIGCLTAMAGADMAIGLYERWAAKRIGVDETPTSRPDQQ