Protein Info for GFF1120 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 transmembrane" amino acids 25 to 43 (19 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 132 to 152 (21 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details amino acids 207 to 226 (20 residues), see Phobius details amino acids 247 to 264 (18 residues), see Phobius details amino acids 270 to 287 (18 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 416 to 433 (18 residues), see Phobius details amino acids 439 to 459 (21 residues), see Phobius details PF04932: Wzy_C" amino acids 255 to 393 (139 residues), 49.5 bits, see alignment E=2e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (491 amino acids)

>GFF1120 hypothetical protein (Xanthobacter sp. DMC5)
VEVTAETPDDTPAEEPVRRRRVRSLPDRIGFWFFLAMVILAPVPDGSIALLWIQVWTGFA
TVAVLLISYLEASRGAVRLIGGLLAVLAAYGLVAYLQSISPGPSPLAIWSEAGTILGIEI
APLSGSVRNTPLIFLGRPLLAALVLTVAVMIGPDRQRAGQVLRAVVGAACLYGLVGFIGF
ALDAESLRPFDQSGALTTFFLNKNTSAIYLGSAFLIVLAMLLPPAIDAMRERKPLSSLFS
GPGGRRRAIAASAGLFVLVLLPLTLSRAGVILTLLAAIGAVVFKLRLRKRASIWKLAFGI
LVLLSLIYGISGGAWRERQVQIGFDSLGRFDAYGMMLGAVKERPLLGYGLGSFSESFPQF
RTEDLGTSAVFDIGHSTAVELIFEGGYPLALLVFAYVALCGVLLVRGAIRRPSDPYILAG
LLVGLIGLVHTSFDFSLQIPGFLIIYLSVVGIGLGRSFLPREERKYIKTRVVRRPVGPEA
TEAVRAASPAK