Protein Info for GFF1110 in Variovorax sp. SCN45

Annotation: Recombination protein RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 TIGR00615: recombination protein RecR" amino acids 5 to 196 (192 residues), 227.3 bits, see alignment E=5.9e-72 PF21176: RecR_HhH" amino acids 7 to 50 (44 residues), 76.4 bits, see alignment 2.9e-25 PF02132: RecR_ZnF" amino acids 54 to 74 (21 residues), 28.5 bits, see alignment (E = 2.5e-10) PF01751: Toprim" amino acids 81 to 162 (82 residues), 37.8 bits, see alignment E=4.5e-13 PF13662: Toprim_4" amino acids 81 to 171 (91 residues), 86.2 bits, see alignment E=3.7e-28 PF21175: RecR_C" amino acids 173 to 196 (24 residues), 43.5 bits, see alignment (E = 4.7e-15)

Best Hits

Swiss-Prot: 80% identical to RECR_RHOFT: Recombination protein RecR (recR) from Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)

KEGG orthology group: K06187, recombination protein RecR (inferred from 97% identity to vpe:Varpa_2507)

MetaCyc: 54% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>GFF1110 Recombination protein RecR (Variovorax sp. SCN45)
MADASSLDALIDALRRLPGVGVKSASRMAFHLLQHDRDGAQLLARALQQAAGNVRHCELC
NTFTEAPICSVCMDSRRDVTKLCVVETPADQAALERTGAFRGYYFVLMGKLSPLDGIGPN
DIGLQKLFNRALDGTVSEVILATNFTAEGEATAHVIGEALKQRGLMVTRLARGVPAGSEL
EYVDLGTIAHALVDRR