Protein Info for GFF1100 in Variovorax sp. SCN45

Annotation: Probable inner membrane transmembrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 565 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 66 to 83 (18 residues), see Phobius details amino acids 91 to 112 (22 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 186 to 218 (33 residues), see Phobius details amino acids 239 to 264 (26 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 314 to 331 (18 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details amino acids 363 to 385 (23 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details amino acids 439 to 462 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 88% identity to vpe:Varpa_2497)

Predicted SEED Role

"Probable inner membrane transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (565 amino acids)

>GFF1100 Probable inner membrane transmembrane protein (Variovorax sp. SCN45)
VRRLPRIALLLLCAAYLLPGLVGRGPWKSADITAFGYMAELARTTEGISRWFDPLLLGLR
PETPALVPYWIGAWAIKIAPSWLNPDLAVRIAFAFLLWGTFTATWYAVYYLARTARAQPV
AFAFGGEARPTDYARAIADGGLLALIACLGLAQLGHETTPALAQLFFASYLFYGVAALPY
RRAGPVIALIVGTLGITLSGAPTVGLALAIGSTLYIAYERRSVAKNRTEFDIDSDDGPGY
TLGAFATMASVTALAAVLVFALGLPQWKITLTGGSLFGDIRGQAKLLLWFTWPVWPLAIW
TLWRWRRQLNARHVALPFWFALVPLAATWTTDFSDRSLMLALPAFATLAAFALPTFRRSA
AALVDWFNVLFFSGLALLGWIYWIAMQTGVPPKPAASVTRLVPGFVPEFSPIAVVLAAAA
TIAWCWLVRWRTGRHRAALWKTLVLPAGGTALCWMLLMTLWLPPIDYARSYVPQVHAVAE
RVGQPNCIAELALSRPHIAALRYHGQFNLQPLLLGTDCPWLLASPETIERLHTIIPFDQW
RFSGTLRRPSSPADDLLLYQKITPQ