Protein Info for PS417_05550 in Pseudomonas simiae WCS417

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 92 to 111 (20 residues), see Phobius details amino acids 155 to 175 (21 residues), see Phobius details amino acids 195 to 214 (20 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 12 to 116 (105 residues), 82.4 bits, see alignment E=1.3e-27 PF00528: BPD_transp_1" amino acids 33 to 221 (189 residues), 79.5 bits, see alignment E=1.4e-26

Best Hits

KEGG orthology group: K10002, glutamate/aspartate transport system permease protein (inferred from 99% identity to pfs:PFLU1137)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5I0 at UniProt or InterPro

Protein Sequence (223 amino acids)

>PS417_05550 amino acid ABC transporter permease (Pseudomonas simiae WCS417)
MDFDFSGIIPAIPGLWNGMVMTLQLMVMGVVGGIALGTVLALMRLSSSKLLSRVAGAYVN
YFRSIPLLLVITWFYLAVPFVLRWITGEDTPIGAFTSCVVAFMMFEAAYFCEIVRAGVQS
IPKGQMAAAQAMGMTYGQTMRLIILPQAFRKMTPLLLQQSIILFQDTSLVYTVGLVDFLN
SARSNGDIIGRSNEFLIFAGVVYFIISFSASLLVKRLQKRFAV