Protein Info for GFF1081 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 28 to 44 (17 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 268 to 296 (29 residues), see Phobius details amino acids 304 to 335 (32 residues), see Phobius details PF02653: BPD_transp_2" amino acids 51 to 303 (253 residues), 108.2 bits, see alignment E=2.2e-35

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 84% identity to pol:Bpro_0601)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (358 amino acids)

>GFF1081 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) (Hydrogenophaga sp. GW460-11-11-14-LB1)
MFYRENGQFKTTYRADQQIFPITQDRRMVWAFIAFAFIAVPLLADEYLLRAILIPFLIMS
LAALGVNILVGYCGQISLGSGAFMAVGAYGAYNFFVRVPGMPLIPALILGGLCATFFGIL
FGLPSLRVRGLYLAVATLAAQFFADWMFLRIKWFTLDTPSGSVSVSNLQVFGFSLESAAG
KYLFCLAVLVVIALLAKNLVRSAIGREWMAIRDMDVAAAVIGIRPMYAKLSAFAVSSFII
GVAGALWAFVHLSAWEPAAFSVDVSFRLLFMVIIGGLGSIVGSFFGAAFIVVLPIFLNQV
LPAAGALVGIEISTVAVSHAEFMVFGALIVWFLIVEPHGLGKLWSLGKQKLRIWPFPH