Protein Info for GFF1080 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 74 to 98 (25 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 133 to 156 (24 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details

Best Hits

KEGG orthology group: K03453, bile acid:Na+ symporter, BASS family (inferred from 44% identity to rpe:RPE_0694)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>GFF1080 hypothetical protein (Xanthobacter sp. DMC5)
MSPGFLPALALTRLLAWLGRRSAPAVAASVFIGLALPPFAALAKPLVVPTILALLVLAFV
RTSMAGAFTVRRAGIAGLACAWVMLVLPLAMGLITRLFGEPNAIVLALIMQASAPPIMSA
PAFAALLGLDARLVLVTMLGGMALTPLTAPGLVFHFSGGALALDPLALALRLAAVVGGTM
GAGLLIRRLLGLKRVEAISAHLDGLNVVLLGLLAVGLMDGVTYAFLDQPGFMAGLVALAF
FVSLLGFGATALIFRAVDPGDAMMLGFCGGHRNMAVVIAATGAVLPHETWLYVAAAQFPI
YLLPVVMLPLARRVKSAGELRGQRQAQG