Protein Info for PS417_05460 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1883 transmembrane" amino acids 961 to 977 (17 residues), see Phobius details amino acids 1055 to 1074 (20 residues), see Phobius details PF20178: DUF6543" amino acids 439 to 581 (143 residues), 40.2 bits, see alignment 1.6e-14 amino acids 704 to 978 (275 residues), 72.8 bits, see alignment E=1.8e-24

Best Hits

Predicted SEED Role

"FIG00960960: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U2Q1 at UniProt or InterPro

Protein Sequence (1883 amino acids)

>PS417_05460 hypothetical protein (Pseudomonas simiae WCS417)
MTDTPNPLSPLAVRDFLPLSPAPFRPLNESLLLEATARWHASREHMLTLTAAAPSIRAAL
TAFIQEQLGLDGDSVQLHFAATVDQPQRHVTLTQACAFVHQIPVPSSLAQRCRVIGLPVG
KTQYAAQPFELLKPFTQLNVQQALRTAWVRYWWFTRAPGTSVSRRDHAVAQYSSHLQAAA
QLACACGVITADQLKPLLTVLDPPSGALQLDGQKIYTEQLLLKRTGLADAEIPGALVITL
DAEIVLQLLYLPSEEPALNLFNSRVSMEQWLLDHPTLFPGVTAITRDNQIDYREVNDPLQ
AGVTHLLEHRLREKQASLAYPHGRDIAEHGHRALDAADQVDRHQHSQGFFALPRAAELTA
VESDVARDTPPMLFAGLTADLPLAQRRHALSRQQQPLFGAEHASALLPPPNDEQLATLRS
QLNRLHEAQQQAHEAATALWGQSQHQLLELSQQANPDYHTLLQARLNGLLAEAGLQRQLN
QISQAGHDMLLAALDPLNAPDPELKVSVATLTLSISERSNGAVNIQRKELDGVLLITLEA
ALLDASTPQDLLLYWPGSQGGLQHFASLQALEQWLGVTPSDAASLELALLNQTPFEYSLT
VQLDGWVTQIEAMLQRAPDDTERQARELEPLRVQAIQELGVSTHSVRELAYAQLLEQNQS
GALAAQLPAWLGQVSAADRVELKALLERYILAFERADEALNLKLPLISSFCKKRLHARLS
RDFSLKQPFHVQLDVPESVTHSQHFVEAPGAPGTPTKTVPVPSATRVKMSLDELALSNID
TPTSERLTFMKVEVSTQDATEGQALTAGLSANYLRRLVPELDLAQAYEDLIVEAYQGSDR
EADFSREYRLECLLEPHRLLLTLQGRLAFLQKHITATELNTFNIAVNASTAQAWRADGND
IELLPAHLSVGGPDTQDGSSTLSGVTFIRQKNSGSTLLYLPESPDGQALRSYNSLEAARL
ALFRLCLNTAMVNYLAGRALLGNMANHVSRINQAVLRHFDALIGVGTAWPVTTSLASHLL
NAQMGRVKEAHRASARSNSDLYLERYAIKGVQAFSYIKMALGVVPVVGSVIGLYDGWVSA
NDAVAAFRRGDHVQGMHAITQVLQSLIDAGIDVAGGVLITPNAARTRTFGRQLRNAFKGG
RYLQPPMSRKARRIAERFSGYEYGKEIALAHLTPASHGVYRNVYRHTDGDFIVRQGSVYQ
VELQNGHWRLSGNTLKTYKQPIALDEAGQWDTHFGVYGTAQPVGLAGGGGVLGHLADTLE
PLWPMAIRQRLPIWWTDHVLRRQLALNDAINTLSSRLDTQLAATGNLQHLSNQSDIATRK
TLQPTLDEAYAKDIELAIEQANAVQDVIAFTPNREHLALKGMQSRAALIVTSRAVERLKV
AAAALQGLTGQFGDLQVPPTRPAAILQFLQTRKGLSQNIVQALDRIDRLFLVMNEWSANI
NLMAQEADIRLHGRSTRRTAQQIDADLHNTRTMVGEARDDAARWNELYDEGFRTHLRTVH
SIDTFNRYDHVTDPSWLYLQSEVNRVYLDAHLALNTHFALTNTPTTVSQRTRILNECIDA
YARFSLSVKTLSAGYPQHFDLDNLSALLNNLERMTQLARQRIGTPARLHRPRPDEPRGTV
FETDDNRMLIGIKSTDPRTNTTRYTIDNLSGHTETWEQRPNGRAQRQSAPPVALPPEANV
KSVMVNEAQSRLRAVPVYQAKVEAYARQGMLPVDLEHMLVSEAAELTLRSNRIARLDPEE
PSIQPLRTTATELTAAGRTLRTRQSLASRQPTDGMLDDLARHHVVEVRRTASMTELARRA
NGHRDFMQEYEVWDLTATPPRPLWYAHFHYNRRTATFDEFEKAHLKLPEHRYLTHADDPS
LPFSDIGKQSAALSHIRPLWVAL