Protein Info for GFF1064 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Mobile element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 PF05598: DUF772" amino acids 14 to 109 (96 residues), 88.2 bits, see alignment E=4.3e-29 PF01609: DDE_Tnp_1" amino acids 136 to 311 (176 residues), 119.4 bits, see alignment E=1.8e-38

Best Hits

KEGG orthology group: None (inferred from 89% identity to del:DelCs14_1761)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>GFF1064 Mobile element protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSLAESGFERKTKRTRKREFLDEMNLVVPWAELVALIAPHAPAPGLKGGRPPFAVETLLR
IHFLQQWFNLSDPAMEEALYDTPMFREFAGLDMGEDNVPDESTILRFRHLLEKNNLSLQL
LATVNATLTAKGLLLKSGTVVDATLIAAPSSTKNNSGGRDPEMHQTRKGNQWHFGMKAHI
GVDADSGLVHTVVGTAANVNDVTQASALVHGEEADVFADAGYQGVSKREEAQRIEANWHV
AMRPGKRKALDKVTPMGAVLDKLEHVKASIRAKVEHPFRVIKRQFGHVKVRYRGLAKNTA
QLHTLFALSNLWMVRRTLLKEARG