Protein Info for PS417_05330 in Pseudomonas simiae WCS417

Annotation: fimbrial assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 841 PF13954: PapC_N" amino acids 7 to 151 (145 residues), 128.5 bits, see alignment E=3.1e-41 PF00577: Usher" amino acids 169 to 727 (559 residues), 501.2 bits, see alignment E=7.1e-154 PF13953: PapC_C" amino acids 740 to 795 (56 residues), 49.7 bits, see alignment 4e-17

Best Hits

KEGG orthology group: None (inferred from 84% identity to pfs:PFLU1093)

Predicted SEED Role

"FIG027785: Fimbriae usher protein StfC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U7L6 at UniProt or InterPro

Protein Sequence (841 amino acids)

>PS417_05330 fimbrial assembly protein (Pseudomonas simiae WCS417)
MGAGDIEFNTDVLDLVDRTNIDLSQFARSGFILPGTYSMVVQINSQPISEQSVAFYPPDD
DPKGSQACVSRALVEELGLKASGAAGLTWWKGGECLDIQGLPGMEVAGDLATSTLSINLP
QAYLEYSAINWDPPSRWDEGVPGLLVDYNVTAQASHQKNDSVRHNFSGNGTVGANAGAWR
LRADWQGRVDRDRDQAARHPTLEWSRYYAYRAIPALKARMVLGEDYLYSELFDSFRFTGA
ALNSDESQLPPNLRGYAPEVVGVAKTNARVIISQQGRVLYETLVAAGPFRIQDLNDAVSG
RLDVRVEEQDGSVHTFQIDTAGVPYLTRPGQVRYKLASGRPSNLQYGGDGDFFGSGEFSW
GISNGWSLYGGGITDNNYRALSVGAGRDLLAFGAVSLDATQSHASVWNETLSGKSYRLQY
SKKFEEYDSQVTFAGYRFSEKNYLSMSEYLDARHYGRNGELAGLDKESEYSGSWKPIGGS
KALYTATLNKQFRDLGATVYLSYNKQTYWERPATQRWNVSMSRYFNVGSVKNLSVSLNMY
RTQEYNYKDNGMALTVSLPLGRSGTLSLDANRAAGKNSFSTRYSDRLDERNSYQLSASDN
AASGYLSHIGDQADIDLAASKQQGDYTSLSVSARGGGTLTAHGAALHRTNSTGGTRLMVD
TAGVPDVPVRGYGAPTRSNAFGKAVISDIGSYQRTAASVDLESLPSNVEATQSVTQLTLT
EGAIGYRFLDVISGQKAMAVLRLPDGSSPPFGATVKNVKQQDTGIVNDGGNVYLSGIQPG
EEMIVSWGGAERCVLTLPGVLPADGLTHALQLGCRRVATDQSLPEPAKLTGKPTDMENTS
S