Protein Info for GFF1048 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: Beta-fimbriae usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 802 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13954: PapC_N" amino acids 31 to 162 (132 residues), 52 bits, see alignment E=1.2e-17 PF00577: Usher" amino acids 179 to 707 (529 residues), 299.3 bits, see alignment E=1e-92 PF13953: PapC_C" amino acids 722 to 785 (64 residues), 47.3 bits, see alignment E=2.3e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to see:SNSL254_A4928)

Predicted SEED Role

"Beta-fimbriae usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (802 amino acids)

>GFF1048 Beta-fimbriae usher protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
VKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISPNVAQYFSRAPRFLPGS
HTVMVKINGVNRGSLVARFDTEGQLCVDDDFLSASGLVSLNISAKETCHSLQEDYPSAII
TPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYNLYASRSESSGSDSRNYAQAN
LEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVFQAQKMRAQVGQINVNSSLFSGA
PINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVRQSGQIIYTAPVNAGAFTLENVPII
RSNTDLNVSVVETDGSTTTFTVPAVSFNLRELTPAGLTMSIGRIRDTTSDYSLPWIYNIS
DGWKLSENWLAQASGVLAQDYQAAGGMLQWLPTNKWTFSGSMLGSKASFGESLQGAKSEL
RASMALPGEIRLDVSTARYSDGYRELTDALNKDAYEYQSSSSANIAWNHNLLGTFSLGYY
TYQATDNDNDSRSIMASWGKTFKYASITANWQHAVNQDDENHNDSNDDDMFYINISIPLG
EQRVGAYMRNQGDKTTYGLQNNGSLSKDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLS
VGGGTDGDNYRNYNATFSGGIAAHEHGITFSPYTIKNTFAIARLSEPESGIEIATPQGRI
WTDHWGQAVIPGLTEWRKSRVEVNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRR
VMLAVKRPDGSWLPKGTSIVDEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRI
HYTLQKTQDKEAFYETAKGVCQ