Protein Info for GFF1042 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: hypothetical cytochrome oxidase associated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 43 to 62 (20 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 107 to 124 (18 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 82% identity to pol:Bpro_1263)

Predicted SEED Role

"hypothetical cytochrome oxidase associated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>GFF1042 hypothetical cytochrome oxidase associated membrane protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MSALHTAGRWLTRHQVLLGGLLLIALLAPSLRGALESRMSTHMLLQFPGLIMAGGLLVHR
ISFTWRQRLLAWNAHGITGLFFAGLVLALAMVPRLLDLVLVDARVEALKIAALLLCGAAL
RLSWQAAGAVVQGFFLGNTLPMMAIAGTLYLEAPARVCNAYRLDEQQFVGSALTWVASAL
AALWLAQVGWRLTRPPTPVPPGAEL