Protein Info for GFF1037 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 77 to 96 (20 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 131 to 150 (20 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details amino acids 254 to 274 (21 residues), see Phobius details amino acids 280 to 296 (17 residues), see Phobius details PF00892: EamA" amino acids 13 to 148 (136 residues), 33.8 bits, see alignment E=1.8e-12 amino acids 164 to 295 (132 residues), 71.1 bits, see alignment E=5.4e-24

Best Hits

KEGG orthology group: None (inferred from 84% identity to vpe:Varpa_3661)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>GFF1037 putative membrane protein (Variovorax sp. SCN45)
MNARMSAALAWGGVLLAGALWGGGALVAQFLIDGGIAPQSLSLARFALGLPLLWWLHWRG
SARPGGHWADLAGRERFQVLATGAAMALNVSCWFVGISHLGAALPTVISICCAPLIVALV
SVLRGYERFGARLLAGLLLALAGVFLLVMPADGWGPLAPGHAAGVAWSLASAFCYAMVVL
GNARMPARVPAVTASAWGMTVAALCMLAVAWPRGITWPAGGAQWLGVGYTGVVTTSVAYL
AFAWGARRLSPTSAVIGTLIEPLVAALLAAALLAEPMAPRQWAGALLLAGAMLLLARRGE
SAQTD