Protein Info for GFF1036 in Sphingobium sp. HT1-2

Annotation: FIG015547: peptidase, M16 family / FIG015287: Zinc protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 961 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF00675: Peptidase_M16" amino acids 63 to 187 (125 residues), 49.8 bits, see alignment E=3.6e-17 amino acids 537 to 671 (135 residues), 61.5 bits, see alignment E=9e-21 PF05193: Peptidase_M16_C" amino acids 221 to 396 (176 residues), 87.5 bits, see alignment E=1.1e-28 amino acids 693 to 871 (179 residues), 87.4 bits, see alignment E=1.2e-28

Best Hits

KEGG orthology group: None (inferred from 86% identity to sch:Sphch_2090)

Predicted SEED Role

"Zinc protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (961 amino acids)

>GFF1036 FIG015547: peptidase, M16 family / FIG015287: Zinc protease (Sphingobium sp. HT1-2)
MILTRMSRRLPLMLGLSALALAPLGSAAQAAPATAAAAPAPLSSLVSAVDIPYQEFRLPN
GLRVIVHTDRKAPIVAVLVWYHVGSRFEPAGKTGFAHLFEHLMFYGSENADGPFFGRLED
IGATDWNGTTWFDRTNYFETVPTGALDRALFLESDRMGHLLGAVTQTKLDAQRGVVQNEK
RMGENEPYGLVEYAQLAGMLPEGHPYRHSTIGSMADLNAASLADVQSWFKTHYGPNNATL
VLAGDIDVPTARAKVEKWFGNIASGPAPQDVDATVPTLDKDVEKVMHDNVAATRLYRNWI
VPGVNSPDLQQLDLALSVFGGLGSSRLDNILVRDEKVAVAVKASIQPFEKLSMVEITVDV
KPGQDPVAVGKRLDALLADYLAEGPSADEVLRAATQQLSGTIGGLEKVGGFSGKAVTLAE
GAVYSDDPGKYKKDLAIYAAATPPSVSAAARKWLGRPVFRLTVSPGERSAEDNALAGNAP
SGSATMHPAHFRDPNGPAPKAGTPPPPTKVAEPPIEPVKDLVFPPVERAKLSNGMSVVFS
RRATVPVVKVSVAFDAGNAADNRQKLGTAALTTALLDEGTTSRNSVQISEEQERLGAGIS
AANSMDATNVGLYALKPNLDASLGLLADIIRNPAFDPKEVERLRSQMLTRIAAEKTQPMA
IAQRMLPPMLYGQAHPYGIPFTGSGTESGVKAVTRADLVAFHDTWMRPDNATIFATGDTT
LAELLPLLEKRFGDWKAPAIAKGAKLFRMDRMMRPSRIVLIDKPQSPQSMILAGQLTNKS
GTDNPVTLITANEVLGGSTTSRLTMDLREAKGWAYGAGTGMPGVKETIPLLVYAPVQTDK
TGESIIAARQDIKDFLTSKGTTQAERDQTINGQILSLPGSFETSSDLLSAMMRNNLLGRP
DDYYATLPATYRAITAAQMDQAAREAINPDRLIWVVVGDAKLVKPQLDAVGLPVEMGTLA
D