Protein Info for GFF1035 in Variovorax sp. SCN45

Annotation: no description

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 transmembrane" amino acids 18 to 37 (20 residues), see Phobius details amino acids 43 to 63 (21 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 181 to 333 (153 residues), 124.3 bits, see alignment E=2e-40 PF00990: GGDEF" amino acids 182 to 330 (149 residues), 127.7 bits, see alignment E=1.8e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>GFF1035 no description (Variovorax sp. SCN45)
MKIEEVRVNEFRKLIKPLSLGMQLGGVFFVAMSWLLADDSYKYDIRQILLLLALTMISIG
ASWKIPFFSLFSITTVWLICLEFVLLAAPSANRDYWMTALSIGISLAVAPVFSRISEYVI
VSIGVWLIFGRGSLMDAPFGGDTKWSWLLISAVILVGIFLNALFARIHRQSILLRNKLVD
LAFTDALTGIDNRRKFLSDVDKAQGSQDMNSACLLMIDIDNFKRINDEFGHPLGDEVLQQ
VAQTIRQSVPDEPCGRLGGEEFGVFLTQGGEERATKIADQLLIEIRELNVIGRKITASVG
ISRMNEKQSFSELMKNADEALYIAKSLGKDRFAIF