Protein Info for GFF1034 in Variovorax sp. SCN45

Annotation: UPF0313 [4Fe-4S] protein YgiQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 TIGR03904: uncharacterized radical SAM protein YgiQ" amino acids 33 to 692 (660 residues), 835.3 bits, see alignment E=1.1e-255 PF08497: Radical_SAM_N" amino acids 33 to 427 (395 residues), 433 bits, see alignment E=8.8e-134 PF04055: Radical_SAM" amino acids 428 to 631 (204 residues), 41.7 bits, see alignment E=2.2e-14 PF11842: DUF3362" amino acids 642 to 754 (113 residues), 196.3 bits, see alignment E=5e-62

Best Hits

KEGG orthology group: None (inferred from 94% identity to vpe:Varpa_3664)

Predicted SEED Role

"Fe-S OXIDOREDUCTASE (1.8.-.-)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>GFF1034 UPF0313 [4Fe-4S] protein YgiQ (Variovorax sp. SCN45)
MNAPVDVSFFARAAKPLNSYRKYWAARFGTAKFLPTSRKEMDALGWDSCDIIVVTGDAYV
DHPSFGMSVIGRMLEAQGFRVGIIAQPDWQSAEPFKVLGKPNLFFGVTAGNMDSMINRYT
ADRKIRSDDAYTPGDVGGSRPDRAAIVYSQRCKEAWNDVPIILGGIEGSLRRIAHYDYWS
DKVRRSIVVDAKCDLLLYGNAERAIVEIAHRLAAKEPVQQIIDVRGTAFVRRETPEGWFE
INSTSVDEPGRVEAHVNPYLMVSEQAKANGATCAKEDEAQAVAKAAEAAGPAGGSVVNPA
IKPLNFVPNPALQPRGKISVPPRDRSVIRLPAYEQVRSDPVLYAHANRVLHLETNPGNAR
ALVQAHGEGATARDVWINPPPIPLTTAEMDYVFDLPYARSPHPRYADENGSHDGATKIPA
WEMIRFSVNIMRGCFGGCTFCSITEHEGRIIQSRSEDSIIKEVEAIRDSVNGFTGTISDL
GGPTANMYRLGCKSPEIEAACRKPSCVYPGICPNLGTNHDPLIKIYRRARALRGIKKILI
GSGLRYDLAVQSPEYVKELVQHHVGGYLKIAPEHTEQGPLTKMMKPGIGSYDKFKQMFEK
YSAEAGKKQYLIPYFIAAHPGTSDEDMMNLAIWLKKNGFRADQVQTFYPSPMATATTMYH
TNKNPLRKITRESETVDIVRGDKRRRLHKAFLRYHDANNWPLLREALKSMGRADLIGNGK
HHLIPTWQPLTDGGYTSARRKNSTAAPVKLAPVKPSKGRILTQHTGLPPRDNGSGPPSRK
SAGPVRGSIRKPR