Protein Info for GFF1026 in Xanthobacter sp. DMC5

Annotation: Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 36 to 56 (21 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details amino acids 252 to 274 (23 residues), see Phobius details amino acids 301 to 323 (23 residues), see Phobius details amino acids 334 to 350 (17 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 387 to 409 (23 residues), see Phobius details amino acids 415 to 432 (18 residues), see Phobius details amino acids 442 to 461 (20 residues), see Phobius details PF13231: PMT_2" amino acids 91 to 263 (173 residues), 33.3 bits, see alignment E=2.8e-12

Best Hits

KEGG orthology group: None (inferred from 78% identity to xau:Xaut_4551)

Predicted SEED Role

"4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family" in subsystem Pterin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (577 amino acids)

>GFF1026 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase (Xanthobacter sp. DMC5)
MAISQPASDHRRAFDLDLPQRLVGILDTASARHGRAVLLLVAVALISFLPGFFSLSPIDR
DEARFAQATKQMLESGNYVDIRFHTQVRYKKPIGIYWLQAATVKAGEAVIGPSARTSIWL
YRLPSLVAAIGAVLLTYWTALVFLSRRGALFASLMMAGCVLLGVEARLAKTDAVLLFTIL
ACFGALARAYIRPPGARLGDWTLAFIFWTGLAAGILVKGPVAPLFIGPAIAALAIADRSG
AFLRPLKPLPGLLWCLLLVLPWFVAIYLVTNGAFYQLAVGVDMMGKVAEGAEGHWGPPGS
YFLAAWGTFWPSIVVAALAAPYVWRNRRGRAERFLLCWLVPSWVVFEIAVTKLPHYVLPV
YPALAILSALVVERGGLAAVGSRLAGVVWFWPGFGIVVSLALGAAYLYFGSGFGLAAWPL
LLLGVMLLWWAARAYSRVGIEGAFLTALAGAMVLYLAVWQTMLPQMRALWISERLAAVVK
QQGCPAANVASFPYQEPSLVFLVGTQIQYGLPKEAAALLKKGGCALAFIDERFTPVFERH
AGLLGLKYHAVATISGFTYNGGRPTSITVFRSDEAAP