Protein Info for GFF1022 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG001826: putative inner membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 34 to 55 (22 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details PF12821: ThrE_2" amino acids 13 to 146 (134 residues), 112.4 bits, see alignment E=9.1e-37

Best Hits

Swiss-Prot: 100% identical to YJJB_SALPK: UPF0442 protein YjjB (yjjB) from Salmonella paratyphi A (strain AKU_12601)

KEGG orthology group: None (inferred from 97% identity to cko:CKO_03436)

Predicted SEED Role

"FIG001826: putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>GFF1022 FIG001826: putative inner membrane protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MGIIDFLLALMQDMILSAIPAVGFAMVFNVPHRALPWCALLGALGHGSRMLMMSAGFNIE
WSTFMASLLVGSIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISHLGYSEP
MMITLLTNFLKASSIVGALSIGLSVPGLWLYRKRPRV