Protein Info for GFF1013 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF00768: Peptidase_S11" amino acids 81 to 299 (219 residues), 199.6 bits, see alignment E=1.1e-62 PF13354: Beta-lactamase2" amino acids 85 to 226 (142 residues), 47.4 bits, see alignment E=3.2e-16 PF05036: SPOR" amino acids 597 to 675 (79 residues), 29.6 bits, see alignment E=1.4e-10

Best Hits

Predicted SEED Role

"D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4)" in subsystem Peptidoglycan Biosynthesis (EC 3.4.16.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.16.4

Use Curated BLAST to search for 3.4.16.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (677 amino acids)

>GFF1013 hypothetical protein (Xanthobacter sp. DMC5)
MRYARGGLPNCSKALALAVLAAFSLTATVADAKPRKKTQVERSAKSSSKSSAKSASKTKP
SSNTKTVAAADPDGGRWRYGSAAIIVDANTGKVLYEENSDALRHPASVTKIMTLYLLFEQ
LEAGNLRLDSKLEVSAKAASQQPSKLGMRPGQTIEVEDAIKAIVTRSANDVAVVIAENLA
GSESAFAEAMTEKARALGMSRTVYRNASGLPNVNQVTTARDLSILGRAIQDRFPKQYKYF
ATRTFYYRGQAIGNHNRLLGRIDGVDGIKTGYTNASGYNLVTSVKRDGRYLVGVVLGGSS
GGARDARMTSLISQNLPTAYAGGRVAPKITEVADNAFSIGKPGSFNAPMPVVAARDDVQP
HAVAPLPKPAVVEANAEPTTTASIPAKPAARSANQVVAAAAPSAPLPQVKPGSAEPIKPV
AVKTVAIQKPTAANVAAAPAPAPVQVAATTQFTSAPAGVLGYLGPSNLAQSPAAAAATAA
AEGRAHAKPQQVAARTDVPAPAPAAPTGKDTSRLGVPDAAAEQAMRAARIAAMEPDDPYA
RALRSAREGVADDRARPQAAQQAAKPVRTASLAPVAAPQPAAAPAPSQRSHVPASAKNGW
SIQIGAFDGERAARTKLDAARARVKSALAGADPYTEKVTKGSTELYRARFAGFDEKSAKE
ACRLLKRNDFDCMPIRN