Protein Info for GEMAOFIL_04151 in Pseudomonas lactucae CFBP13502

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 444 PF02120: Flg_hook" amino acids 311 to 393 (83 residues), 73.6 bits, see alignment E=4.6e-25

Best Hits

KEGG orthology group: K02414, flagellar hook-length control protein FliK (inferred from 85% identity to pfs:PFLU4430)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (444 amino acids)

>GEMAOFIL_04151 hypothetical protein (Pseudomonas lactucae CFBP13502)
MPVAPNSLLQAAPAAKPQAPVATPAVVAADPQDKGPGFAQVFASQGSKPVVKGDDNAARP
TRDKPADAGAKPVDSRDTPAATTPAVADSGNTLPAKPPATSDDSAGQDDEAPVDPTLVQQ
PPVDPVVDPALIAAVTPVAVPVENPVPAAAVTDAKAQPVAAAPITATEEVKPDFDPAADP
LDAMPVVRLAMEQGGHVSASSQAPAKTAAPTTQDQPTAAQNFAAGLATMVDQQATKDSTD
TGGDKAFGGLIEDGLKDLKRADSDTRVDDFANRLAALTQAATPKTANALPPVTNAPLAMH
QSGWTDEIVNRVMYLSSANLKSAEIQLQPAELGRLDIKVNMTADQQAQVNFMSAHPVVRE
ALESQSGRLREMFAQQGMGQVDVNVSDQSRGQEQQQQQAQTRGVSGSGGRGGDNGDSGGH
IDVAETMTPVTSTVIGSSAVDYYA