Protein Info for GEMAOFIL_02859 in Pseudomonas lactucae CFBP13502

Annotation: Aerotaxis receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 521 transmembrane" amino acids 146 to 168 (23 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 17 to 109 (93 residues), 43.1 bits, see alignment E=2.2e-15 PF00989: PAS" amino acids 21 to 107 (87 residues), 33.5 bits, see alignment E=9e-12 PF13426: PAS_9" amino acids 23 to 110 (88 residues), 37.6 bits, see alignment E=5.8e-13 PF08447: PAS_3" amino acids 31 to 111 (81 residues), 50.2 bits, see alignment E=6.2e-17 PF00015: MCPsignal" amino acids 318 to 486 (169 residues), 160.9 bits, see alignment E=6.8e-51

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU3409)

Predicted SEED Role

"Aerotaxis receptor Aer"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (521 amino acids)

>GEMAOFIL_02859 Aerotaxis receptor (Pseudomonas lactucae CFBP13502)
MRNNQPVTQREISLAPSQKLISTTDTQGGITYCNEAFVEISGFEHADLIGAPQNIVRHPD
VPPAVFAHMWSALKQGLPWMGIVKNRSKNGDHYWVNAYVTPIFEGSRVVGFESVRVKPTA
DEIRRAQALYQRLSQGKAAIPHQDTWLPTLLGCVPYVVTGLAGALGGLFLSMPAAVAVAV
AVAVPVGVLCARARLGSTLRLLNGVEPSTSDALIAQMYSDARGPQGRLETAFLSQNARLK
TCLTRLQDSAEQLSVLAGQSDQLATASSKGLDRQRVETEQVSAAVNQMAATTQEVASHVQ
RTADATQQANVLTGRGRDVARDTREAIERLSAVVGETGTTVAQLARDSDEIGSVVDVIKG
IADQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTSQSTTQIHALITQLQTSSNN
AVQSMQNGHRQAQEGVAWVLEADQALVGISEAVAHITDMTTQIAAATEEQSAVAEEISRT
IVTIAELADQTSVQAHQSTDLSKELTNTAATQYALVERFNR