Protein Info for GEMAOFIL_01576 in Pseudomonas lactucae CFBP13502

Annotation: Beta-barrel assembly-enhancing protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF01435: Peptidase_M48" amino acids 62 to 251 (190 residues), 119.7 bits, see alignment E=3.4e-38 PF14559: TPR_19" amino acids 284 to 339 (56 residues), 35.7 bits, see alignment 2.3e-12 amino acids 347 to 404 (58 residues), 34.3 bits, see alignment 6.1e-12

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU1472)

Predicted SEED Role

"Exported zinc metalloprotease YfgC precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (477 amino acids)

>GEMAOFIL_01576 Beta-barrel assembly-enhancing protease (Pseudomonas lactucae CFBP13502)
MTFLRPTLLTLACLLASPGFADDLPSLGDASSAIVSPQQEYQLGRAWLAYLRGQVSQLND
PQLKDYVETSVYKLVETSQVNDRRLEFILINSPQLNAFAAPGGIVGVNGGLFLNAQTEGE
YASVLAHELAHLSQRHFARGVEAQQRMQIPMMAALLGGIIAAAAGAGDAGIAAIAGTQAA
AIQEQRRFSRQNEQEADRIGIVNLEKAGYDPRSMPTMFERLGRQYRFDAKPPEFLLTHPV
TESRIADTRNRAEQAKPGGKEDSLRYQLIRARVQLQYEDTSGLAAKRFQAQLDENPKNDV
ARYGLAIAQIKASQFKQARDSLQPLLAKAPNDITYNLAQIQLDIDNNHLPDAQQRTDRML
TQYPGNYPLNQMRVDLLLKQNRTADAEKALDGLLKSRPDDPDVWYQVAETRGLSGNIIGL
HQARAEYFALVGDFQQAIQQLDFAKRRAGSNFPLSSRIDARQRELIEQERLVKGMMG