Protein Info for GEMAOFIL_00695 in Pseudomonas lactucae CFBP13502

Annotation: D-inositol-3-phosphate glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF20706: GT4-conflict" amino acids 142 to 299 (158 residues), 30.5 bits, see alignment E=2.9e-11 PF00534: Glycos_transf_1" amino acids 192 to 329 (138 residues), 90.2 bits, see alignment E=1.8e-29 PF13692: Glyco_trans_1_4" amino acids 195 to 328 (134 residues), 91.1 bits, see alignment E=1.2e-29

Best Hits

KEGG orthology group: None (inferred from 56% identity to ppg:PputGB1_4987)

Predicted SEED Role

"Glycosyl transferase in large core OS assembly cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>GEMAOFIL_00695 D-inositol-3-phosphate glycosyltransferase (Pseudomonas lactucae CFBP13502)
MSILNVMWAGGTAFASVQKVHQQILSHADSGVPVHTWLLQGRATDSEGLVEQAVEWNLSS
ARLKGRHLWKLLMPWMRARFQKALPEDVQVVLLDGIGVARVLLPVLKRLPHVRAVVIFHG
ATRLRRADQQLVAQFPASQLTLAAVSQTLADALERHLQRPVAVLRSAFDPAAFRAAALSR
EQARTRLELPLTGSPVLGAVGRLVEGKGFACLLEAFAGVSADKPHARLVIIGEGPAREAL
EARIEQLGLQGKVTLAGHLPEAATLYRAFDWVAIPSTEEGLGLILQEAVMAGVPVLTSEL
AVFREQLGDAGWYAPADDAAAWGDLMARAFATSGAQVVEAQSRVLAPDQAWDEFTQTTRR
LFSCR