Protein Info for GEMAOFIL_00528 in Pseudomonas lactucae CFBP13502

Annotation: putative Fe(2+)-trafficking protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 90 PF04362: Iron_traffic" amino acids 1 to 88 (88 residues), 139 bits, see alignment E=1.8e-45

Best Hits

Swiss-Prot: 91% identical to FETP_PSEFS: Probable Fe(2+)-trafficking protein (PFLU_0322) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: None (inferred from 91% identity to pfs:PFLU0322)

Predicted SEED Role

"FIG001341: Probable Fe(2+)-trafficking protein YggX" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (90 amino acids)

>GEMAOFIL_00528 putative Fe(2+)-trafficking protein (Pseudomonas lactucae CFBP13502)
MTRTVMCRKYKEELEGLERPPYPGAKGQDIYDNVSAKAWGDWLKHQTLLINEKRLNMMNA
EDRKYLAGEMDKFFSGEDYAQAEGYVPPAQ