Protein Info for Echvi_4680 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transcriptional regulators

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 PF12802: MarR_2" amino acids 34 to 92 (59 residues), 49.1 bits, see alignment E=1e-16 PF01047: MarR" amino acids 36 to 92 (57 residues), 58.6 bits, see alignment E=9.3e-20 PF13463: HTH_27" amino acids 36 to 101 (66 residues), 28 bits, see alignment E=4.4e-10 PF13412: HTH_24" amino acids 42 to 82 (41 residues), 27.9 bits, see alignment E=2.7e-10

Best Hits

KEGG orthology group: None (inferred from 60% identity to shg:Sph21_2970)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5L9 at UniProt or InterPro

Protein Sequence (143 amino acids)

>Echvi_4680 Transcriptional regulators (Echinicola vietnamensis KMM 6221, DSM 17526)
MTKEQFSQYSFLLDRTARRVKQYAQQKFKVGDFDVTVDQWLVLKHLAENEALSQTELATL
VFKDQPTLTRIIDILCKKGYVQRVQHPEDRRSFQLLLTTAGEEKVAELKPKISGIREKAW
ENLGQKDFEEFKRILNTIYTNLE