Protein Info for Echvi_4616 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: ABC-type antimicrobial peptide transport system, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 453 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 326 to 353 (28 residues), see Phobius details amino acids 378 to 404 (27 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details PF12704: MacB_PCD" amino acids 24 to 238 (215 residues), 132 bits, see alignment E=3.8e-42 PF02687: FtsX" amino acids 333 to 446 (114 residues), 74.7 bits, see alignment E=6.5e-25

Best Hits

Predicted SEED Role

"Cell division protein FtsX" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G663 at UniProt or InterPro

Protein Sequence (453 amino acids)

>Echvi_4616 ABC-type antimicrobial peptide transport system, permease component (Echinicola vietnamensis KMM 6221, DSM 17526)
MFGPRLLSNFYSALEAVMANRLRSLLTALGIIFGVAAVIAMMAIGNGAQQEILEQIKLVG
VNNIIIEPVVEQVEEEVQDGPGGGPGAEKNKFSPGLRMLDVEAIQEVIPGIQRISPEVIM
DTHIVKSGVRRSAKLVGVTPEYFKVTNFKLREGGMFTENNLLNGDPVCIIGRGVQTKFFS
KENAIGKRIKCGNQWMRVIGILEERIVSDKSLAKLGIRDFNMDVYIPMQTMLVRYKNRDM
VTSGSLVSGRQGVVIINGEVQQNTSNKQTNYHQIDKLVVQVEESSMLNPTAEVLSRLLER
KHYNVIDFEITIPELLLKQQQRTQNIFNIVLGAIAGISLLVGGIGIMNIMLASVMERIKE
IGLRLALGAQKTDIVHQFLFEAMMISVTGGIIGVILGIILASLVSQFGDFPTIITIPSIL
VSFSVAATVGLIFGIAPAKRAASQDPITSLRHE