Protein Info for Echvi_4564 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: TonB-linked outer membrane protein, SusC/RagA family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1139 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 133 to 1139 (1007 residues), 895 bits, see alignment E=8.3e-273 PF13715: CarbopepD_reg_2" amino acids 134 to 216 (83 residues), 74.9 bits, see alignment 6.4e-25 PF13620: CarboxypepD_reg" amino acids 134 to 204 (71 residues), 46.9 bits, see alignment 4.5e-16 PF07715: Plug" amino acids 223 to 329 (107 residues), 83.7 bits, see alignment E=1.9e-27 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 305 to 335 (31 residues), 64.2 bits, see alignment (E = 7.2e-22)

Best Hits

KEGG orthology group: None (inferred from 59% identity to zpr:ZPR_1629)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5B0 at UniProt or InterPro

Protein Sequence (1139 amino acids)

>Echvi_4564 TonB-linked outer membrane protein, SusC/RagA family (Echinicola vietnamensis KMM 6221, DSM 17526)
MKINLRKRIVQLTKYTFRVFVVQVLFMQVLFANPSNSQNLSEYQVRLQTSNASLREVLEM
LEEQTDFEFAYNQAVNRSKEQITLHMEADLRKVLKAITEQCDFQFRRVEQNIYVTAVDVP
DPELAVVEKEDKEIQGKVLDAQRNEPIVGATVIVQGTSQGTITDLDGHFSLDVPDDATAL
QVSFLGYEAKTVALGNQSTLTIYLREEEGLLEEVVVLGYDSQKKKDLTGAVSVVNVDEMK
TLPSASVENMLAGRAPGVQVLSDNGPGGNVTVRIRGFGTVNNNDPLYIIDGTPVTNGLNT
INPQDIESFQVLKDAAASSIYGSRAANGVVIITTKKGRSEETQITFDAYTGIQQAFNLPR
MLSAQEYGDMLWQASENDGKAPASDVYGSDPNGPVIPEWLDEAQTIPAADVDWVNEIFQT
APVQSYNLTLSKGGDQGSHVMTLGYFNKEGVIKHTGFDRFSARFNSDYKVKDFLQVGENF
NASLTRTNDVGVNTSLGSIVYDAFQFPSIVPVRDLNGNFGGNPINDIGNPLGNLYRRKDN
TKNRIKLMGNVFAEAKLAEGLSFRTNLGMDYENYFQRAFSPVYDEILSLNAVNSLSDNSS
FYYQMAWTNTLNYSRKIGEGTLDVLLGQESIENYFESKSASRQEFLYEDDNFHYLSYGTE
NQRNSGYASKWNLLSFFGKVNYNWKDRYLFSATLRNDGTSRLENNKWDIFPAFSAGWRIS
NEDFLNLGSNVDELKLRASWGQTGNQQVPSYSTLASFQNNITYSNYAIDGSQESVAIGLV
ETRVANPSLNWEVTTQSGVGVDLAMFDERLQVSADYYNKVTDDLLIYAPIPPTYGGTNDG
TWINGGKMRNRGFELGAKYNGSAGEVFYTVGLNYSFYKNELLELADGIDYLGIPGSSLHS
VNFGQEISRTIVGQPIGTFFGYESMGIFQSDEEVAAHGIQPEAQPGDLRFKDINGDGVLD
ANDRTAIGSPHPKAIIGFTTNFYYKGFDLALFFNGAFGQQIYNLTKYKTLFFNQSAYNKS
NEVLDAWTPENTDTDIPRLSLDDENENIRPSSYYLENASYFKLNNLQVGYSFPQSMLGGM
ELRVYGQASNVFTITSYSGMTPEIGLQNYSSNNRNLDIGVDRGVYPPSRTFTLGFNVKF