Protein Info for Echvi_4552 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Bacterial Ig-like domain (group 4)./Putative glycosyl hydrolase of unknown function (DUF1680).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1042 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF13385: Laminin_G_3" amino acids 108 to 267 (160 residues), 63.5 bits, see alignment E=5.2e-21 PF07532: Big_4" amino acids 311 to 369 (59 residues), 31.7 bits, see alignment 1.7e-11 PF07944: Glyco_hydro_127" amino acids 411 to 501 (91 residues), 28.9 bits, see alignment E=1.2e-10 amino acids 552 to 853 (302 residues), 223.9 bits, see alignment E=7e-70 PF20736: Glyco_hydro127M" amino acids 866 to 957 (92 residues), 92.5 bits, see alignment E=3e-30

Best Hits

Predicted SEED Role

"Putative glycosyl hydrolase of unknown function (DUF1680)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G794 at UniProt or InterPro

Protein Sequence (1042 amino acids)

>Echvi_4552 Bacterial Ig-like domain (group 4)./Putative glycosyl hydrolase of unknown function (DUF1680). (Echinicola vietnamensis KMM 6221, DSM 17526)
MHANKCSNYGHFIGQKHCGKLMDMTKANRIPALIILLLCCLPAFTWAQSGDQILDGIGET
DLIARYRLDKDAKDWSRNNLHAQLKGHGTSFVKDETFSSVLALSGEKGAFVSIPPETLRG
LESMSISCWVFLMENAPGQLLFNIGSETENRLLMAPSGTEDGKTALALLTTPSGKKYVLE
GKPLETGKWHHLTLVLDIPDKVARYYLNGEKTAEITAPLDLTSLFESTPSPSFVTIGKPA
SPDDPYLKAKLHDFRIYRTPLTAGQVANIHRNALQGEGESRVNEQKQPEDDLQVFAEGHP
QLYSEYLTGVDDVQVATETGHLPRLPRYVNGTYRDGINGPKVRVIWPAPKDNHQVQEPGK
YTVKGKIAGSSIVPVATVTIKEKVDEAVPEQSLEAFGLDAVSLETDIHGHSSKFIENRDK
FISTLAGTNPDDFLYMFRNAFGQEQPAGAVPLGVWDSQETKLRGHATGHYLTAIAQAYAS
TGYDTALQANFADKMAYMVNTLYNLSQMAGKPSAEADGHNADPTAVPMGPGKDFYDSDLS
EEGIRTDYWNWGEGYISAYPPDQFIMLEHGAKYGGQKDQVWAPYYTLHKILAGLMDIYEV
SGNEKALSVAKGMGTWVAARLDKLPTSTLISMWNTYIAGEFGGMNEAMARLYRITGSSRY
LAAAKLFDNITVFYGNADHDHGLAKNVDTFRGLHANQHIPQIMGALEMYRDTESAPYFHI
ADNFWHIATNDYMYSIGGVAGARTPANAECFTTEPATLYEFGFSAGGQNETCATYNMLKL
SRNLFLFQQDPAYMDYYERGLYNHILASVAKDSPANTYHVPLRPGSIKQFGNPKMKGFTC
CNGTAIESSTKLQNSIYFKSVDDQSLYVNLFVPSTLHWKERNLTIVQSTAFPKEDHTRLT
VQGKGKFVLKIRVPQWATEGIKVSINGKPAQVDAVPGTYATIQRKWKNGDTIDINIPFQF
HLEPVMDQQNIASLFYGPVLLAAQEEEPRKEWRKVTLNAKNIGATINGNPEALEFTIDGV
TYKPFYETYGRHSVYLDVTLED