Protein Info for Echvi_4543 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Calx-beta domain.

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2512 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03160: Calx-beta" amino acids 313 to 390 (78 residues), 14 bits, see alignment (E = 1.4e-05) amino acids 406 to 504 (99 residues), 27.1 bits, see alignment (E = 1.1e-09) PF18676: MBG_2" amino acids 1215 to 1287 (73 residues), 91.3 bits, see alignment (E = 1.4e-29) amino acids 1294 to 1366 (73 residues), 87.1 bits, see alignment (E = 3e-28) amino acids 1373 to 1445 (73 residues), 92.5 bits, see alignment (E = 5.9e-30) amino acids 1452 to 1524 (73 residues), 86.5 bits, see alignment (E = 4.5e-28) amino acids 1531 to 1603 (73 residues), 90.9 bits, see alignment (E = 1.9e-29) amino acids 1610 to 1682 (73 residues), 88.7 bits, see alignment (E = 8.7e-29) amino acids 1689 to 1761 (73 residues), 88 bits, see alignment (E = 1.5e-28) amino acids 1768 to 1840 (73 residues), 87.8 bits, see alignment (E = 1.7e-28) amino acids 1847 to 1919 (73 residues), 90.2 bits, see alignment (E = 3e-29) amino acids 1926 to 1998 (73 residues), 88 bits, see alignment (E = 1.5e-28) amino acids 2005 to 2077 (73 residues), 87.3 bits, see alignment (E = 2.5e-28) amino acids 2085 to 2156 (72 residues), 82.4 bits, see alignment (E = 8.2e-27) amino acids 2163 to 2235 (73 residues), 71.5 bits, see alignment (E = 2.1e-23) PF13585: CHU_C" amino acids 2427 to 2507 (81 residues), 68.5 bits, see alignment (E = 1.4e-22) TIGR04131: gliding motility-associated C-terminal domain" amino acids 2428 to 2511 (84 residues), 59.1 bits, see alignment (E = 1.8e-20)

Best Hits

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G6T2 at UniProt or InterPro

Protein Sequence (2512 amino acids)

>Echvi_4543 Calx-beta domain. (Echinicola vietnamensis KMM 6221, DSM 17526)
MKNIYLLTYFKALLLFVVGLMCSYQLYGQTFMENFDDDPAFNVTSKDFTNDGIRYQINGL
SSNYTNATSNSTFSLSEDGAADYALQFDKGGSFNINSIVISLGSGQVFSLQSLSFDIIAD
ANITFSTNEGGSKSFPSNGVYSVEQNYDFSSESGFSNITSFTISGGNITVDLDDIVYSIP
TANTAPTASSFTASNGPYENLVYTFAASDFGYSDADGTPLNHVLIESVAGTGTLFLDGDN
DDTFDGGEAVVGGQQISKASLDAGNLQYIQAGSTNTSFQFEVNDGTDNSSGNYTATLNVT
PVPTVTLSVSPTSKYESLATATTVTATLSNSYGMNTTVGLSTGGTATNSVDYSLSNTTIT
VPAGSTTGSVTLNNIPDALYEMNETIIIDINTVTGGLESGTQQVTYTILDDDPPPNATLE
VLDYWNPITNEAGGQAYVRGKLDHVAGVTVTVPLSFSGTATGGGTDYAVTGSTITLSPGE
LMDSVRVTSLHDGVEEGDETVVIDMETPTNAVESGTQQVTLTIKDANMVAPTGYSVTFDQ
ANINAANQTAASFTFAGAEVGADYAYTFTSSGGGTNVTGSGSVATATDQITGIDLSGLGD
GTVTLSVTLTDGFGNTGSVVTDTNTKDTSAPSGYSASMDQANINAANQTAASFTFAGAEV
GADYAYTFTSSGGGTNVTGSGSVATATDQITGIDLSGLGDGTVTLSVTLTDGFGNTGSVV
TDTNTKDTSAPSGYSASMDQANINAANQSAASFTFAGAEVGADYAYTFTSSGGGTNVTGS
GTVATATDQITGIDLSGLGDGTVTLSVTLTDGFGNTGSVVTDTNTKDTSAPSSYSVTFDQ
ANINAANQSAASFTFAGAEVGADYAYTFTSSGGGTNVTGSGTVATATDQITGIDLSGLGD
GTVTLSVTLTDGFGNTGSVVTDTNTKDTSAPSGYSVTLDQPIINRANQSAVSFTFSGAEV
GTTYDYELSSSGGGTPVSGTGTVSSSSSQVTGINVSVLGDGIVTLSMTLTDSFGNQGASV
SDTSTKETNEAPTVSGLSIKGVMTVGETLSADYTFNDADGDAENGTVYQWYRADDNTGTG
KSAIPTANNKQYSLQAGDRGKFLSVEVTPGDGQDAGTTVESTLEGPVKADQSITFGGITP
KAYGDATFTLGDAQTDQGLEVTYVADDPSMVSINGNQATILNAGTTQITASQSGDQTTNA
ATPVVRNLTINTATLTVTAEDQSKVYGGVDPALTVTYAGFVNGDDETALGGSLKVSRAMG
EDVGDYAITASGYTSPNYTITYTAGTFEITPAALTVTAAEQSKVYGSVDPALTVTYAGFV
NGDDETALGGTLTVSRTTGEDVGTYAITAAGYTSPNYTVTYTAGTFEITPAALTVTAEEQ
SKVYGSADPALTVTYAGFVNGDDETALGGSLTVSRAAGEDVGDYAITASGHTSTNYTINY
ASGTFEITPAALKVTAEDQSKVYGSMDPALPVTYAGFVNGDDETALGGSLKVTRATGEDV
GGYAITASGYTSPNYTITYTAGTFEITPAALTVTAADQSKIYGSADPALTVSYAGFMNGD
DETALGGSLTVSRATGEDVGDYAITASGHTSTNYTINYASGTFEITPAALTVTAADQSKV
YGSMDPAMTVTYAGFVNGDDETALGGSLTLSRATGEDVGDYTITASGYTSPNYTVTYAAG
TFEITPAALTVTAADQAKVYGSMDPALTVTYAGFVNGDDETALGGSLTVSRATGEDVGDY
TITASGYTSSNYTINYASGTFEITPAALTVMAADQSKVYGSADPAMTVSYAGFVNGDDET
ALGGSLTVSRATGEDVGDYAITASGHISTNYTINYASGTFEITPAALTVTAADQAKVYGS
ADPALTVTYAGFVNGDDAMALGGSLTVSRAAGEDVGDYAITASGYTSTNYTITYAAGTFE
ITPAALTVMAADQSKVYGSADPAMTVSYAGFVNGDDETALGGSLTVSRATGEDVGDYTIT
ASGYTSSNYTINYASGTFEITPAALTVTAEGQSKVYGSMDPALTVTYAGFVNGDDAMALG
GSLTVSRAAGEDVGDYAITASGYTSTNYTINYASGTFEITPAAMTVTVADHSKVYGSVDP
AMTVTYAGFVNGDDETALGGSLKVTRATGEDVGDYTITASGYTSMNYTITYTAGTFAIIP
AVLTVTANDHVRIFGASDPRFTYQVAGLVNGDGHEIFEGQLERAPGEGVGAYAINKGSLS
AGRNYQIQFTSALLTIKAIEVVAFYEQPAVAVAWGTASDQIPLPTEVLVRTRHDEMINLA
VEWDRSSINVRSRGSYTVTGELNLPEGVTRTAEGPFQQVVVEAKPAPEDIVLDHDNFVAD
IGSDQIVVGGLSVIDPVDDQHTLNLVGNAKDNAYFSLSGTALFWSSGEALPGRRTFEVLV
AVTDADGNKVEKLFVVNRLRVPLDEVTIYNTFTPNQDGANDTWGVPELQFYTDVRVMVFE
RSGNRVFFTDDPDEHWEGQFNGKEMAAGTYFWVIEVGETGEVRRGTLNLLRR