Protein Info for Echvi_4535 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 339 to 359 (21 residues), see Phobius details PF13424: TPR_12" amino acids 108 to 180 (73 residues), 40.1 bits, see alignment E=1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5Y4 at UniProt or InterPro

Protein Sequence (547 amino acids)

>Echvi_4535 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MISLLRIVISIFFLAVTFVPKTLAQIPRQLDQKLAAAQELAKRNPELAFLTATEVYEQSL
PQELDSITGKSQLVRGKILFQFGLYQPAAEAFYEAEHLFEHLRRPYYLAQVNNALGEVYY
KIKTPEDALSRHEKALELFKGIDHGEGEAETKGFIGSMYEKMRNYPKALAYQREALGLFE
DLGLKGHLAFVRENIGSIHEDLEQFDSAYVNFQKAYLLNSEVGDSLRLVGTLNNLGDVFR
KTREPEKGLDYSKKAAEMSARLGFLDAQNSAIVDISKAYAGMGDYSNAYRYLEQSRQLSE
VVYSEESARQIAIQEAQNQLYTKNQQISQLEQMREFDTLVKWLLVFLVLLLCVLGWVIFN
RQKLKIRSNKELLQQQQEILQVKERLIATEKENRQLLELKIKTEDRAHSKSLTAQTLHLI
DKNQMLEGIQVKLKHILEENPKDQKKKIRNLIKEIDFNFSHDTDWDDFKNNFEKVHQDFF
KNLQRQTAGLTPAEMKLASLMRLNLSSKEIASTLGISLDSLRIARYRLRKKLQLEKGESL
QQFILCI