Protein Info for Echvi_4515 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: transporter, SSS family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 45 to 64 (20 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 119 to 141 (23 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 324 to 346 (23 residues), see Phobius details amino acids 376 to 398 (23 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 433 to 455 (23 residues), see Phobius details amino acids 471 to 493 (23 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 35 to 441 (407 residues), 245.5 bits, see alignment E=5.4e-77 PF00474: SSF" amino acids 35 to 441 (407 residues), 161.2 bits, see alignment E=1.8e-51

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 58% identity to bth:BT_2813)

Predicted SEED Role

"Predicted sialic acid transporter" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5W4 at UniProt or InterPro

Protein Sequence (500 amino acids)

>Echvi_4515 transporter, SSS family (Echinicola vietnamensis KMM 6221, DSM 17526)
MDLPITDLVVFVVYMTAIIAFGVSFSFRKRTPKDYTTGGGRLPSWAIGMSIFATFVSSIS
FLALPGNAYLSNWNGFVFSLSIPIAAWVAVKYFVPLYRKIKSESAYYYLETRFGPWARTY
ASICYLLTQLARMGAILYLLALPMNALFGWDISTIIISTGVSVIIYAMLGGIEAVVWTDA
IQGIVLIAGALVCVSVVLFSMPEGPQQVIKVANEANKFSLGSFDFDFTSSTFWMILVYGL
FINLQNFGIDQSYVQRYLSAKNEREAVRSTWFGSLLYIPVSLLFFFIGTALFSYYQVYPE
LLPEDLKVGASADKVFPYFIVTGLPKGITGLLIASIFAAGMSTVSTSVNSSATVLLSDFY
KKYINKSASDKQAMGVLFLTSFVMGGASIVVGLAFNGVSSALDAWWALSSIFSGGILGLF
LLGLIAKHVSGKMAGIGVLVGVLAISWMSLSPWLLTGTGMEDYQNTLHTNLTIVLGTVTI
FVVGFVASNLVFLKLKTEEK