Protein Info for Echvi_4512 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transposase domain (DUF772).

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 transmembrane" amino acids 63 to 79 (17 residues), see Phobius details amino acids 425 to 440 (16 residues), see Phobius details PF05598: DUF772" amino acids 69 to 131 (63 residues), 29.6 bits, see alignment E=2.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (455 amino acids)

>Echvi_4512 Transposase domain (DUF772). (Echinicola vietnamensis KMM 6221, DSM 17526)
MFADKNTMKDTIQLPIFKDFDGYSPKYHFFKNSLLGQIHDSLPWEKLSSLVPEKLQGPGA
PRWFGAKGMFALMFLKAYLNTSDRQLIERFNTDWSLQYFCGKVLAADQQIRDLTIMTRIR
AYIEEHCHWEQVQEVLMDHWKQDVDNSHVLLMDATCYESYVRFPTDPKLLWECCQWVFEK
QLFKKCKQLGIKRPRSKYREQKTKQLGYFRKRRKPFKETLKRKKSLVFLLEKALGQLQEI
LDFYSRGGVGPNDFACLKTIKKVLVQQQFLLENPPSELKDRIVSLHKPYLRPIVRGKENK
RVEFGMKAHILQTGGLSFIDKLDFNNFNVRLKISTVKHTRVFGQTSQLGADRIYATNANR
KYCTSKDIFTGFPKKGPRPHSKAEKMLSAEVSKQRATAREGAFGNHKNHYGLVKIRVKGD
KREKLAVLFGMMAANAVAVAKRRNQQESPPTNKAA