Protein Info for Echvi_4478 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: heavy metal efflux pump (cobalt-zinc-cadmium)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1470 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 344 to 361 (18 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details amino acids 393 to 417 (25 residues), see Phobius details amino acids 445 to 467 (23 residues), see Phobius details amino acids 479 to 504 (26 residues), see Phobius details amino acids 547 to 567 (21 residues), see Phobius details amino acids 888 to 907 (20 residues), see Phobius details amino acids 914 to 933 (20 residues), see Phobius details amino acids 939 to 961 (23 residues), see Phobius details amino acids 989 to 1010 (22 residues), see Phobius details amino acids 1018 to 1044 (27 residues), see Phobius details amino acids 1056 to 1078 (23 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1056 (1056 residues), 1148.3 bits, see alignment E=0 PF00873: ACR_tran" amino acids 5 to 1044 (1040 residues), 900.5 bits, see alignment E=1.3e-274 PF02321: OEP" amino acids 1091 to 1269 (179 residues), 51.3 bits, see alignment E=1.3e-17 amino acids 1297 to 1466 (170 residues), 52.6 bits, see alignment E=5.1e-18

Best Hits

KEGG orthology group: None (inferred from 78% identity to gfo:GFO_1186)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G540 at UniProt or InterPro

Protein Sequence (1470 amino acids)

>Echvi_4478 heavy metal efflux pump (cobalt-zinc-cadmium) (Echinicola vietnamensis KMM 6221, DSM 17526)
MINKIISFSIKNKFIVGLLTLALIGVGIYSMATVNLGSVPDITNNQVQVMTVSPNLATED
IEQFVTYPVELAMGNLPGVDEIRSISRFGLSVVTIVFEDEMGIYKPRQLVQEKLNELKET
IPEKFGSPTMGPISTGLGQIYEYTIQPKEGYEDQYSPMELRTIQDWIVKRQLTLLDGVVE
VNSFGGYIKQYEVAINPEKLNAQNVSISQVYEALARNNVNTGGAYIEKNRMSNFIRGEGL
VRSLDDIRKIVIKTENGIPVTIGDVAEKVHFGNQVRYGAFTQDGKEAVGGIIMMMKGSNP
NAVIQDVKARMEEVEKSLPEGLTINTIIDRSDLISRTTDTVKTNLFEGALIVIFALVILL
GSLRGGIITATTIPLSLLFAFIMMKQFNVWANLMSLGAIDFGIIIDGAVIIIEGTVYEIQ
KRIRSGKIKFNQVLMDEVAYDAGSTMMGSAFFGQIIILIVFAPILFLTGVEGKMFQPMAY
TFGFAMIGAIILCLTYVPMMSALFMKPIQNKKNWFGRFERWLERVSDKIIGSIQKVYLPL
LKGALRFKAIVIIVAIVLLGAAGFVFSRMGGEFVPQLDEGDIAMQALIRPGSSLSESKEV
SIKIENLLLESFPEIKTVTARIGVADIPTDPMPMDIADMYLILEKDKDQWVSAETKDELI
EQIKDKLETHLTGVNLVFTQPVELRFNELLEGVREDIAVKLYGEDLEVLSEKVQEMANII
STVSGAGDVNPERTSGLPQMTVRYNRDKVAQYGLVIQKLNEYVSSAFAGGVAGVIFEGEK
RFDLVIRFDEAHRKSIDDLRTLYIDLPDGTQVPIKEVADISYMPGPMQISRDNTYRRTYV
GVNTRGRDVESVVNDIQEKLDAELDLPPGYYITYGGEFENLQRAKSRLQIVVPIALFLIF
VLLYFALKSFSQSIMIYMAIPLAAIGGVFGLWIRGMPFSISAGVGFIVLFGVAVLNGLVL
INRFNSLKEEGVTSIRERILTGTKERIRPIMLTATTDIFGFLPMAFSASAGAEVQRPLAT
VVIGGMLTATLLTLVVLPVLYTFVEGRREKGKSLSAPNANVIIVFFVCGGLFGLPAVANA
QQQDSLPTITLEQARKRAVESYPKIQSARLEIENQEMLKKTAWDFGNTQIFTGKEEVGNG
SDVSAEGVYTQIGIQQQQIDIFGIAPKLKLQKERVALAEKALDLSVIELELEVSRAWGMV
YAAKNTYQVYQHLDSIFTDIERAARIRLETEASSKLEYLATSNQANQVQIQKEQAYRDYL
SSLQRLNLWFANDTLFTVPDIPANQLDRPLNYVVDSLMSHPLLNVSKQRVNVADATIKER
RSQFLPKLQGQYGRQQIAGQSGFYQYQIGIRIPLLFGPELGRTQSAKIQRNIASQNLRQT
QLEINTAYQNTKEKYLKWHNSWVYYRDEALPLAADQRSGAITAYREGAIDYVAFLQNIRD
AIRIEVDSWDAFGNYLDSRYQLEYFLKTSN