Protein Info for Echvi_4399 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 transmembrane" amino acids 16 to 39 (24 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 102 to 127 (26 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 185 to 207 (23 residues), see Phobius details amino acids 212 to 248 (37 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 353 to 375 (23 residues), see Phobius details amino acids 391 to 420 (30 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G5L5 at UniProt or InterPro

Protein Sequence (433 amino acids)

>Echvi_4399 hypothetical protein (Echinicola vietnamensis KMM 6221, DSM 17526)
MFQSSNMVISKSNIYLFLYEIFFFGIMTLCYLNVIIPFWGYLGFKNNFNEHSFYIGIIIV
IFFTGLGIKLKSNFISTVWHFILIYLFYPQVIYYFSTSNNLLPVVGYIILLIVFLVIIKL
PLPLLALPKFSIETSEKNFLIVFWGSSFLVFPYLIYFKHVDFNNLLLSDIYDTRLSFRDV
SKPGILNYLLSPLSRVILPSLLVVALLTRRFFYVGLCFVFVAYLFLANGALKSIFLGFFA
VVFFYLGSTFRKKLILFMSLILILCFLSITEYEIYSTGFLSDMAIRRVFFVPPYFEDLYY
SYFNEHNFTYYTHSFLSFFKSGESNLSLSRKMGQYFSGNEDLNANIGIIPDGFLSIGWIG
VVLHSIIFSISFKIFSNVNVGKEYFGLFFVYIYYANTAFIGTFFISHAFLFLLIFVYIFL
NNKNKSITNTIYE