Protein Info for Echvi_4393 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 78 to 190 (113 residues), 30.7 bits, see alignment E=4.6e-11 PF00534: Glycos_transf_1" amino acids 213 to 381 (169 residues), 50.9 bits, see alignment E=2.1e-17 PF13692: Glyco_trans_1_4" amino acids 226 to 363 (138 residues), 31.4 bits, see alignment E=3.4e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See L0G4W6 at UniProt or InterPro

Protein Sequence (396 amino acids)

>Echvi_4393 Glycosyltransferase (Echinicola vietnamensis KMM 6221, DSM 17526)
MSNVMSKNILLVSFVVSNKGHGREYLTNIANLTSKSSNVSVFVPSDTDLQKELSSEITVY
KSRYGYGAIEREKYKKYGKLSQVIRGGARVRDSLSIYKDLISLIKKSDFDIIHILDSEYI
SLLSFLNSINEEGKIYITLHASDFYFNSFTFGSIYKSCIRKLLNRSFNKVNGVICHGDWI
KDRLQKSFPSVSERILALNYPSQVYKNLSSKSLIRENLRIPKDKTLVLFIGMIRRDKRIE
IALETISLLSEEYCLLIAGNPTDYSLSDIDYLIDKYKVGHKVVTDLGFLQKNKFEEYFSI
SDVLLSCHSKTFPSASGPVSDARTYGLPVVVSPGGQLQYYVESSKVGVVSNGFAAKDYAR
AIEVIKGEKNQIRESIVEASREYSWDSFVNRQVNFY