Protein Info for Echvi_4385 in Echinicola vietnamensis KMM 6221, DSM 17526

Annotation: Transposase and inactivated derivatives

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 PF05717: TnpB_IS66" amino acids 9 to 104 (96 residues), 112.9 bits, see alignment E=3e-37

Best Hits

Swiss-Prot: 30% identical to Y4HO_SINFN: Uncharacterized protein y4hO (NGR_a03350) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 58% identity to lby:Lbys_2238)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (113 amino acids)

>Echvi_4385 Transposase and inactivated derivatives (Echinicola vietnamensis KMM 6221, DSM 17526)
MFSLGSHHQYFLYRSPVDMRKGFNGLSGIVTNELDRDPVSGEVFVFVNRHRNLIKLLHWE
KGGFVVYYKRLEKGTFLLPEDRGDGVLDWPELVLMVAGIQVEGYRQRPRYIPG